Autosomal context counts
Value
list of context counts generated by contextcounter
Examples
sig_opportunities()
#> $GRCh38_tso500_trincucleotide_autosomal
#> ACA ACC ACG ACT ATA ATC ATG ATT CCA CCC CCG CCT CTA
#> 44360 39934 15859 37266 24482 35395 43634 34160 60668 49156 26148 56173 21926
#> CTC CTG CTT GCA GCC GCG GCT GTA GTC GTG GTT TCA TCC
#> 51672 72675 51143 49299 50759 21555 49806 27166 33171 45371 31980 50011 51740
#> TCG TCT TTA TTC TTG TTT OTHER
#> 16538 53400 25759 50461 42424 51723 0
#>
#> $GRCh38_genome_dinucleotide_autosomal
#> AC AT CC CG CT GC TA TC
#> 296799296 226707215 304463484 29403065 411467170 124936156 191730173 350911281
#> TG TT OTHER
#> 427309272 576938292 165047079
#>
#> $GRCh38_genome_trinucleotide_autosomal
#> ACA ACC ACG ACT ATA ATC ATG ATT
#> 119012480 67747193 15146753 94892542 120766156 78713412 107729216 146205171
#> CCA CCC CCG CCT CTA CTC CTG CTT
#> 107931875 76434468 16303633 103793100 75675881 99106599 118939447 117744705
#> GCA GCC GCG GCT GTA GTC GTG GTT
#> 84736367 69175621 14111520 81848493 66252975 55279200 88658315 86608493
#> TCA TCC TCG TCT TTA TTC TTG TTT
#> 115628044 91105815 13244081 130932605 120764978 117811561 111981796 226379353
#> OTHER
#> 165048055
#>
#> $GRCh38_genome_pentanucleotide_autosomal
#> AACAA AACAC AACAG AACAT AACCA AACCC AACCG AACCT
#> 11424148 6494598 8142211 9841652 6732363 5057050 658970 6430314
#> AACGA AACGC AACGG AACGT AACTA AACTC AACTG AACTT
#> 1053040 676410 902334 1204157 6360369 6482967 7039319 8108441
#> AATAA AATAC AATAG AATAT AATCA AATCC AATCG AATCT
#> 15759369 7111749 7169063 13508954 8612547 6428063 918572 8216106
#> AATGA AATGC AATGG AATGT AATTA AATTC AATTG AATTT
#> 10513404 6481812 7936885 9919455 11832075 8142634 7356677 16297551
#> ACCAA ACCAC ACCAG ACCAT ACCCA ACCCC ACCCG ACCCT
#> 6264974 5877403 5886645 6733208 6504455 4313236 1119338 4957778
#> ACCGA ACCGC ACCGG ACCGT ACCTA ACCTC ACCTG ACCTT
#> 635932 821143 598230 909551 4257598 6363434 6705069 5799039
#> ACTAA ACTAC ACTAG ACTAT ACTCA ACTCC ACTCG ACTCT
#> 6159123 3877157 3642063 5618933 6677084 6109529 918549 7024844
#> ACTGA ACTGC ACTGG ACTGT ACTTA ACTTC ACTTG ACTTT
#> 6838274 6432679 5759415 6808587 5934690 6245879 6273839 10571719
#> AGCAA AGCAC AGCAG AGCAT AGCCA AGCCC AGCCG AGCCT
#> 8326982 5529821 7973851 6744219 8491605 4945523 1387748 8584340
#> AGCGA AGCGC AGCGG AGCGT AGCTA AGCTC AGCTG AGCTT
#> 1187087 835659 901494 842055 5798164 5509916 8271268 6518582
#> AGTAA AGTAC AGTAG AGTAT AGTCA AGTCC AGTCG AGTCT
#> 6924715 3287053 5921737 5876488 6115254 4282549 565359 6533003
#> AGTGA AGTGC AGTGG AGTGT AGTTA AGTTC AGTTG AGTTT
#> 8552514 5460888 7043350 6338349 5858983 5908310 5488531 10735264
#> ATCAA ATCAC ATCAG ATCAT ATCCA ATCCC ATCCG ATCCT
#> 7243994 6355852 5996249 7693599 6619389 5518242 716900 6567097
#> ATCGA ATCGC ATCGG ATCGT ATCTA ATCTC ATCTG ATCTT
#> 743218 933946 503168 846571 5809973 7466279 7139206 8559408
#> ATTAA ATTAC ATTAG ATTAT ATTCA ATTCC ATTCG ATTCT
#> 10540193 6307625 6360001 11155933 9458163 6711951 791798 11113509
#> ATTGA ATTGC ATTGG ATTGT ATTTA ATTTC ATTTG ATTTT
#> 6851716 5372083 4910795 7587818 13447822 11368094 10640723 23586481
#> CACAA CACAC CACAG CACAT CACCA CACCC CACCG CACCT
#> 7658574 8565905 8847533 8370036 8191881 5483771 1289179 7249334
#> CACGA CACGC CACGG CACGT CACTA CACTC CACTG CACTT
#> 1122486 1670126 1291228 1522886 4296856 6030271 8804392 8263578
#> CATAA CATAC CATAG CATAT CATCA CATCC CATCG CATCT
#> 7021122 4029230 4922518 7910690 7176357 5213520 777253 8110034
#> CATGA CATGC CATGG CATGT CATTA CATTC CATTG CATTT
#> 7162381 5738571 6953175 7862591 6843811 7658020 6221408 14128323
#> CCCAA CCCAC CCCAG CCCAT CCCCA CCCCC CCCCG CCCCT
#> 6988763 6171722 11140994 5955485 7188304 3953913 1548580 5222488
#> CCCGA CCCGC CCCGG CCCGT CCCTA CCCTC CCCTG CCCTT
#> 1071434 1446401 1961027 1215404 3590518 5854280 7052084 6072835
#> CCTAA CCTAC CCTAG CCTAT CCTCA CCTCC CCTCG CCTCT
#> 4880648 3271851 4108879 4356563 8544761 9752216 1467954 8031106
#> CCTGA CCTGC CCTGG CCTGT CCTTA CCTTC CCTTG CCTTT
#> 7607646 6887270 9898587 7818010 4586091 7068833 6172604 9339847
#> CGCAA CGCAC CGCAG CGCAT CGCCA CGCCC CGCCG CGCCT
#> 685383 866723 1117421 713533 1399813 1635358 414252 2032392
#> CGCGA CGCGC CGCGG CGCGT CGCTA CGCTC CGCTG CGCTT
#> 235999 545201 482407 216689 478739 1002597 1152493 1132462
#> CGTAA CGTAC CGTAG CGTAT CGTCA CGTCC CGTCG CGTCT
#> 725993 406450 614550 846107 786007 761819 159303 1403791
#> CGTGA CGTGC CGTGG CGTGT CGTTA CGTTC CGTTG CGTTT
#> 1606537 1126931 1581953 1291312 660838 800869 882258 1491970
#> CTCAA CTCAC CTCAG CTCAT CTCCA CTCCC CTCCG CTCCT
#> 8153277 7218616 9764689 7269962 8738610 8666022 1390660 9846706
#> CTCGA CTCGC CTCGG CTCGT CTCTA CTCTC CTCTG CTCTT
#> 1066889 938726 1746188 982629 6108268 7850896 10122565 9241639
#> CTTAA CTTAC CTTAG CTTAT CTTCA CTTCC CTTCG CTTCT
#> 6818809 3978419 4538243 6179877 8318712 8358213 922437 10222503
#> CTTGA CTTGC CTTGG CTTGT CTTTA CTTTC CTTTG CTTTT
#> 7264065 5164261 6675759 6148991 8485626 9529406 9909675 15229489
#> GACAA GACAC GACAG GACAT GACCA GACCC GACCG GACCT
#> 5602482 4204072 6658617 5413460 4663226 3168310 534166 4427650
#> GACGA GACGC GACGG GACGT GACTA GACTC GACTG GACTT
#> 646084 572626 1125487 766723 3462083 3951798 4652705 5429583
#> GATAA GATAC GATAG GATAT GATCA GATCC GATCG GATCT
#> 5944980 3169958 3739393 5965473 5168914 3405694 804884 5061353
#> GATGA GATGC GATGG GATGT GATTA GATTC GATTG GATTT
#> 6141448 3659957 6192147 5283615 6000937 4994827 4370402 8809119
#> GCCAA GCCAC GCCAG GCCAT GCCCA GCCCC GCCCG GCCCT
#> 5613597 5769295 6704078 5264063 6105682 3957468 1419947 4599979
#> GCCGA GCCGC GCCGG GCCGT GCCTA GCCTC GCCTG GCCTT
#> 1187514 923088 1330113 708188 3363954 8080055 8608830 5539614
#> GCTAA GCTAC GCTAG GCTAT GCTCA GCTCC GCTCG GCTCT
#> 4795993 3369135 3067904 4103136 6649215 4419171 686284 5992893
#> GCTGA GCTGC GCTGG GCTGT GCTTA GCTTC GCTTG GCTTT
#> 6945045 5299650 9207574 5684812 3876718 5338687 4816576 7595458
#> GGCAA GGCAC GGCAG GGCAT GGCCA GGCCC GGCCG GGCCT
#> 5537451 4350682 7814719 5416845 6273056 3670848 1463326 5757489
#> GGCGA GGCGC GGCGG GGCGT GGCTA GGCTC GGCTG GGCTT
#> 909030 1322080 1874933 1375772 3822413 5457534 8864424 5264845
#> GGTAA GGTAC GGTAG GGTAT GGTCA GGTCC GGTCG GGTCT
#> 4121560 2383146 3453963 3902159 4537666 2759635 519278 4976769
#> GGTGA GGTGC GGTGG GGTGT GGTTA GGTTC GGTTG GGTTT
#> 6021546 3824175 7551797 4816648 3403561 3947241 4329019 7198873
#> GTCAA GTCAC GTCAG GTCAT GTCCA GTCCC GTCCG GTCCT
#> 4335161 4031843 5123896 4791037 4061807 3856000 514344 4541549
#> GTCGA GTCGC GTCGG GTCGT GTCTA GTCTC GTCTG GTCTT
#> 429369 545431 545704 501942 3579157 6648045 5169524 6604265
#> GTTAA GTTAC GTTAG GTTAT GTTCA GTTCC GTTCG GTTCT
#> 5329631 3143050 3491779 5053279 6222455 4084454 653870 6378360
#> GTTGA GTTGC GTTGG GTTGT GTTTA GTTTC GTTTG GTTTT
#> 4997945 3990614 4744776 4896114 6411653 7726637 6973720 12509975
#> TACAA TACAC TACAG TACAT TACCA TACCC TACCG TACCT
#> 8119069 4436780 7424748 7808331 5174763 3185686 482538 5017839
#> TACGA TACGC TACGG TACGT TACTA TACTC TACTG TACTT
#> 621779 435810 567454 968056 5177978 4264966 5342541 7224515
#> TATAA TATAC TATAG TATAT TATCA TATCC TATCG TATCT
#> 10225862 5320433 5375579 13591490 6331873 4374357 526202 7587374
#> TATGA TATGC TATGG TATGT TATTA TATTC TATTG TATTT
#> 6613814 4131636 4770277 8367821 9686926 7280126 6773933 19808130
#> TCCAA TCCAC TCCAG TCCAT TCCCA TCCCC TCCCG TCCCT
#> 7265512 5959481 8436676 7899724 10458521 5688665 1606403 7789472
#> TCCGA TCCGC TCCGG TCCGT TCCTA TCCTC TCCTG TCCTT
#> 633015 1030990 778175 1053364 5405872 7498263 9845537 9755891
#> TCTAA TCTAC TCTAG TCTAT TCTCA TCTCC TCTCG TCTCT
#> 6810254 5209411 5276757 7127918 10535491 8361098 1661653 12274533
#> TCTGA TCTGC TCTGG TCTGT TCTTA TCTTC TCTTG TCTTT
#> 8292400 7394727 7302823 10761699 7117849 9168466 7990057 15647180
#> TGCAA TGCAC TGCAG TGCAT TGCCA TGCCC TGCCG TGCCT
#> 7790767 5622068 9108320 7137363 7186559 5831352 883575 9218224
#> TGCGA TGCGC TGCGG TGCGT TGCTA TGCTC TGCTG TGCTT
#> 696154 803662 962788 920455 5236853 5777529 8848875 8711542
#> TGTAA TGTAC TGTAG TGTAT TGTCA TGTCC TGTCG TGTCT
#> 8871465 4173541 5737300 9006622 6842998 5169699 778507 9087433
#> TGTGA TGTGC TGTGG TGTGT TGTTA TGTTC TGTTG TGTTT
#> 8628908 5957312 7600800 11255038 7094362 6682733 7929638 14195875
#> TTCAA TTCAC TTCAG TTCAT TTCCA TTCCC TTCCG TTCCT
#> 10971449 7203190 8798514 10676449 10141596 7502788 873633 11550216
#> TTCGA TTCGC TTCGG TTCGT TTCTA TTCTC TTCTG TTCTT
#> 1004984 610169 732838 1112251 8926938 10867552 11320257 15518251
#> TTTAA TTTAC TTTAG TTTAT TTTCA TTTCC TTTCG TTTCT
#> 15835082 7214641 8256001 16562239 13650276 10913609 1092144 18918626
#> TTTGA TTTGC TTTGG TTTGT TTTTA TTTTC TTTTG TTTTT
#> 11590147 7813631 9801528 14171345 19522861 15950497 15852534 39233648
#> OTHER
#> 165049993
#>