Package index • sigstats

All functions

compute_fraction_from_count(): Convert counts into fractions of total counts

sig_add() `%+%`: Add Two Catalogues

sig_collection_pairwise_stats(): Compute Pairwise Similarity or Distance Metrics Between Signatures

sig_collection_stats(): Compute Summary Statistics for a Signature Collection

sig_combine(): Add Signatures to a Combined Signature Model

sig_combine_collapse_to_single_signature(): Collapse to single signatures

sig_compute_experimental_p_value(): Calculate Experimental P-Value Based on Bootstrap Contributions

sig_cosine_similarity(): Calculate Cosine Matrix Between Two Signatures

sig_gini(): Compute the Gini Coefficient of a Signature or Catalogue

sig_kl_divergence(): Compute KL Divergence from a Uniform Signature

sig_l2_distance(): Compute the L2 Distance Between Two Signatures or Catalogues

sig_l2_norm(): Compute the L2 Norm of a Signature or Catalogue

sig_lp_distance(): Compute L_p Distance Between Two Signatures

sig_model_correctness(): Quantify model correctness for signature deconvolution

sig_model_to_string(): Convert Signature Model to String Representation

sig_opportunities(): Autosomal context counts

sig_reconstruct(): Reconstruct a catalogue from a signature

sig_renormalise(): Signature renormalisation

sig_shannon(): Calculate the Shannon Diversity Index for a Signature

sig_subtract() `%-%`: Subtract Signatures/Catalogues

sig_sum(): Sum a Collection Catalogues

sig_summarise_bootstraps(): Summarise Signature Bootstraps