Package index • sigvis

All functions

auto_palette(): Automatically select a color palette based on signature types

example_dotplot_data(): Generate Example Data for Dot Plot Visualization

example_umap(): Exemplar UMAP dataframe

example_umap_metadata(): Example Metadata for UMAP

fmt_percent(): Create a Percent Formatting Function

fmt_round(): Create a Rounding Function

make_tooltip(): Make a tooltip

pal_set2(): The set2 colour palette

proportion_bar(): Create a Proportion Bar Plot

sig_make_interactive(): Make sigverse overlay visualisation interactive

sig_palette_cn2_type(): Palettes

sig_palette_cn_type(): Palettes

sig_palette_doublet_type(): Palettes

sig_palette_indel_type(): Palettes

sig_palette_rnasnv_type(): Palettes

sig_palette_snv_type(): Palettes

sig_palette_sv_type(): Palettes

sig_visualise(): Visualise Signatures

sig_visualise_bootstraps(): Visualize Bootstrap Contributions for Signatures

sig_visualise_compare(): Compare two signature catalogues by overlaying one over the other

sig_visualise_compare_reconstructed_to_observed(): Visualise a signature overlayed on observed mutational profile

sig_visualise_dimred(): Visualize Dimensionality Reduction Results

sig_visualise_donut(): Visualize Proportions as a Donut Plot

sig_visualise_dotplot(): Visualise Signature Contributions with a Dot Plot

sig_visualise_minified(): Create a Minified Signature Plot with Proportion Bar

theme_minisig(): Theme for small signature/catalogue plots

theme_sigverse(): Sigverse Theme for Signature Plots

vis_options(): Set Visualization Options for Signature Plots